Scaffold GOS2234_1046535

Overview

Basic Information

• Taxon OID: 3300001964
• Scaffold ID: GOS2234_1046535
• Source Dataset Name: Marine microbial communities from Rosario Bank, Honduras - GS018
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1762
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Rosario Bank, Honduras
• Coordinates
  • Lat. (^o): 18.036667
  • Long. (^o): -83.78472
  • Depth (m): 1.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F037233	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2234_10465352	F000302	GGAGG	MVAVMSQDTKDRIRDLERQKIALEDQLELLNGNHLKMVKIEEEIYEIEDTISKLTGGIKIA*
GOS2234_10465353	F037233	AGGAG	MDELDKILSDIAHEENKDYADEWWCMDCEHGPMDESHDKCTRCGAKNSQYQGQEELTGWEDEDIESEVEEIW*
GOS2234_10465354	F000896	AGGAG	MTNKINMVINLSILALLIYLSVAIKKIEDKVFPDPNIMIPLVNQTDARSELEYNMMTFLNNALENAITQQENQ*