Scaffold GOS2229_1008265

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2229_1008265

Scaffold GOS2229_1008265

Overview

Basic Information
Taxon OID	3300001963 Open in IMG/M
Scaffold ID	GOS2229_1008265 Open in IMG/M
Source Dataset Name	Marine microbial communities from Nags Head, North Carolina, USA - GS013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1581
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Nags Head, North Carolina, USA
Coordinates	Lat. (^o)	35.6	Long. (^o)	-75.82	Alt. (m)		Depth (m)	2.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035729	Metagenome	171	Y
F060833	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2229_10082653	F035729	N/A	MKQSHKEKFRKELTEFAKSYETRPNYIDAVRRVQGLEDWYRDLDRQNLTEDVIDQMAKHYDNQTISEGRIYVSGNPNWKE*
GOS2229_10082655	F060833	N/A	MNKNTTHAEIEPVLTEFIVTESYYIKARTREEAYQMVADNDFKYDGIRKHNVNIEVNF*

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