Scaffold GOS2240_1046885

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2240_1046885

Scaffold GOS2240_1046885

Overview

Basic Information
Taxon OID	3300001961 Open in IMG/M
Scaffold ID	GOS2240_1046885 Open in IMG/M
Source Dataset Name	Marine microbial communities from Dirty Rock, Cocos Island, Costa Rica - GS025
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3675
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Dirty Rock, Cocos Island, Costa Rica
Coordinates	Lat. (^o)	5.552778	Long. (^o)	-87.087776	Alt. (m)		Depth (m)	1.1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049704	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2240_10468851	F049704	N/A	TPPYYYYEAMLGTGKKIHLFARDDIEAAYRAEHIAKWHWKTTLEDIYLDKHHHYNQEKHEKEGVS*

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