Scaffold GOS2230_1031739

Overview

Basic Information

• Taxon OID: 3300001960
• Scaffold ID: GOS2230_1031739
• Source Dataset Name: Marine microbial communities from South of Charleston, South Carolina, USA - GS014
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1631
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Charleston, South Carolina, USA
• Coordinates
  • Lat. (^o): 32.506943
  • Long. (^o): -79.263885
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031778	Metagenome / Metatranscriptome	181	N
F045582	Metagenome / Metatranscriptome	152	N
F060659	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2230_10317391	F031778	AGGAGG	MKDSEVMNEKPEDEPEQGTPLPSNLVEVETPSESWKTEFKNEISSLRINGEDVSKIHRAMEELRKMRDSSDRTLRRLIILITLLLCTGLGVGIYSLDYLLRFNADKIDEVIDLNLLAINKSKEGMIKIPLIAISLLEKHPNQMRWDENQSVWTFLDTFTGTRKNFSDDYMYYTPGVIEGLKNDLGLLWNGSSWNWPEGFGPRN*
GOS2230_10317392	F060659	AGGAGG	MAEGKDIYVAINGRVTKPVYQRMQYLAKVLDVSMSTLIANSVAEYIHQVTDEKDGKPSVDMEIARFAYSKKKPQEENP*
GOS2230_10317393	F045582	GGA	MSDHSDSPKESNSLEVGFSPESWKTEFHEEITSVRLNGEKIAEIRDLMDEMKAIKEKNDRTIKGLSIAIISLTIIGLCFLGFGLSYLMRFKVDKLDEMISEGVERFDMTNKTFIHTDAIAQLSDTWHPLLWDRKLQGWFVRKPNGAKRNFYDNIILPKKAYLELTQSSLTWKQSKWHAPKDFPTQLTGGK*