Scaffold GOS2232_1030112

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2232_1030112

Scaffold GOS2232_1030112

Overview

Basic Information
Taxon OID	3300001958 Open in IMG/M
Scaffold ID	GOS2232_1030112 Open in IMG/M
Source Dataset Name	Marine microbial communities from Gulf of Mexico, USA - GS016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1684
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Gulf of Mexico, USA
Coordinates	Lat. (^o)	24.174723	Long. (^o)	-84.344444	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056145	Metagenome	138	Y
F079327	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2232_10301123	F056145	AGGAGG	MKFEITLSDDDWKLMLKNRYGHDNVITRGYMLDIVHDIIDQMHEH*
GOS2232_10301126	F079327	GAGG	MNEKYYIYKLARQVEKTSYHHYDVRMGDGINQGAVYYGLTQDPQMRLSKHRPKKGNDISLIVIAEFDNPWEALEHEASLVAQHYREYGSEPECQGMANTGHRGA*

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