NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2237_1029695

Scaffold GOS2237_1029695


Overview

Basic Information
Taxon OID3300001955 Open in IMG/M
Scaffold IDGOS2237_1029695 Open in IMG/M
Source Dataset NameMarine microbial communities from Gulf of Panama, Panama - GS021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2954
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameGulf of Panama, Panama
CoordinatesLat. (o)8.129167Long. (o)-79.69111Alt. (m)Depth (m)1.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042905Metagenome / Metatranscriptome157N
F042906Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
GOS2237_10296952F042906GAGMPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDENQIRKAEAFIESITNQGILVDEILIGPTDFLASENFYEVMPQLEYIINENSPILAFVSTLIDGDIVRFCDWITSRINTDTEIEIGIATNPHKFYEKNYVQHIKDVLKYIDENLEHEVTYTFVVNIKDYGLDYSALHDQAVKEFNTILDFIPSVSRSHKSNIILATLDKFNEYFNVLSKDTKLNNIMVDHSHGGMNYQVLNYKKGEWFISPFMYENMAIYDDTFKIEKFDDIHPIIESQQYLAKGTECENCELYFSCYNRKIILLRDYLGEDRCIAPKENMMRNIDNFNHAAQTMYQWDGYSVENDKKGYRKKFLVTKDNDPELERIKSISYVK*
GOS2237_10296953F042905AGAAGGMILKLNNTYAGYYNYDPEHSPINQDFLRTEVNLDILHGCDQMCPGCFIPRKNLTNADQLKDLYELLSNGHYYPDEIVIGPTDIFDAQNFEEIINHEYMLKLFEISAIGFTSTLLQPYWVVKEKLDKIWALYRHTKRIPDIDFKIVLDVNKYLDDELNDWYKKLKLFEHGSVQFRVNYYKGVFDRISYNDLCEKTFEDFNAPVVITPSFLTDRNARGKVSQHLANFREDLLNQNIDEKWRNYYTFFDAKFNGLGCQNYSYYNGKLYINPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLNSCVAIKEYMHAAH*
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