Scaffold GOS2237_1000442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2237_1000442

Scaffold GOS2237_1000442

Overview

Basic Information
Taxon OID	3300001955 Open in IMG/M
Scaffold ID	GOS2237_1000442 Open in IMG/M
Source Dataset Name	Marine microbial communities from Gulf of Panama, Panama - GS021
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1760
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Gulf of Panama, Panama
Coordinates	Lat. (^o)	8.129167	Long. (^o)	-79.69111	Alt. (m)		Depth (m)	1.6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074003	Metagenome	120	N
F092692	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2237_10004421	F092692	GAG	MKFYEIKLNIMIDRNPPQVIKHLRSALEEMFEKNRHLNRGNVNLLNIEEKKKR*
GOS2237_10004422	F074003	GAG	MRQTRTSNNQIDLLSIVQSIQRHLESTRKQQNRITPAIARTLAMKIDNSIRKNGSSAISSNSISTKIDYIARMLMGVSSANLMNLSVSNKGGLLAKATLLKGIMSEDKLNAFTAYLSLLRDIPAPVSFQNHMIVNDLYSYLTDDNPSLRTL*

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