Scaffold GOS2235_1031399

Overview

Basic Information

• Taxon OID: 3300001954
• Scaffold ID: GOS2235_1031399
• Source Dataset Name: Marine microbial communities from Colon, Panama - GS019
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1732
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Colon, Panama
• Coordinates
  • Lat. (^o): 10.716389
  • Long. (^o): -80.25445
  • Depth (m): 1.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014025	Metagenome / Metatranscriptome	266	Y
F021321	Metagenome / Metatranscriptome	219	Y
F049033	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2235_10313992	F049033	GGGGG	MDYTNNELALINLINDINKTFYYLGEDGDDVDQFEINKLYKYVDKFASTVTISDSQGE*
GOS2235_10313993	F021321	AGGGGG	MDRDYMANMLFNINDVVETLQGHSINENIIEEYDESQFEEEPKTLMDIPKDWEGSSFTIGDCLLDLQTHINELHDYFASIDDIEEEVQ*
GOS2235_10313996	F014025	GGAG	MKLDNYELSTIHYTIGYYIDNANLDEDENEWLNLLKEKVDSIMMSNIQYESECG*