Scaffold GOS2231_1043592

Overview

Basic Information

• Taxon OID: 3300001953
• Scaffold ID: GOS2231_1043592
• Source Dataset Name: Marine microbial communities from Key West, Florida, USA - GS015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1501
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Key West, Florida, USA
• Coordinates
  • Lat. (^o): 24.488333
  • Long. (^o): -83.07
  • Depth (m): 1.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074003	Metagenome	120	N
F092692	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2231_10435921	F092692	GAG	MNFYESKLNVVIARNPHQAIKRLRSALEEIFEKNRHLNTSKVNLVSIEEKKKR*
GOS2231_10435922	F074003	GAG	MRHSRTSNNQTELLSIVQSIQRHLESNRKQQNRITPAIARTLAMKIDNSIRKNGSSAISSNSISTKIDYIARMLMGVSSANLMNLSVSNKGGLLAKTTLLKGIMSEEHLNAFTTYLNLLIKTPIRLSFQNHMIVNDLYASLTRDNPSMRTL*