Scaffold GOS2249_1023310

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2249_1023310

Scaffold GOS2249_1023310

Overview

Basic Information
Taxon OID	3300001951 Open in IMG/M
Scaffold ID	GOS2249_1023310 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Seamore Island, Equador - GS034
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1526
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	North Seamore Island, Equador
Coordinates	Lat. (^o)	-0.38305557	Long. (^o)	-90.279724	Alt. (m)		Depth (m)	2.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028778	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2249_10233103	F028778	AGTAG	MTYDWTLLQTLIFIITPYFLMLALSSKDEDDDDNMDGGLMTPAYQGI*

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