Scaffold GOS2228_1016316

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2228_1016316

Scaffold GOS2228_1016316

Overview

Basic Information
Taxon OID	3300001948 Open in IMG/M
Scaffold ID	GOS2228_1016316 Open in IMG/M
Source Dataset Name	Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1737
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Chesapeake Bay, Maryland, USA
Coordinates	Lat. (^o)	38.946945	Long. (^o)	-76.41722	Alt. (m)		Depth (m)	13.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076501	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2228_10163164	F076501	N/A	MAVLWPGFQATVAPYLDAPIEKTESDTAKIIADAYGVAVATAMISLIPGSTIISAPPTTGIENAILDTFNQIKDSAGPPTPLMFLGWATETVSYWAAVQWNPLPPPPGYVSPTVGNTVITGGTPSPLDVGLWGAFNNPPSPTPMGNIICGKLIAAFTSHLLTVNGVYNGLIPAAPSPVPG

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