Scaffold GOS2226_1027409

Overview

Basic Information

• Taxon OID: 3300001943
• Scaffold ID: GOS2226_1027409
• Source Dataset Name: Marine microbial communities from Cape May, New Jersey, USA - GS010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1900
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Cape May, New Jersey, USA
• Coordinates
  • Lat. (^o): 38.94
  • Long. (^o): -74.685
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038654	Metagenome / Metatranscriptome	165	N
F055693	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2226_10274091	F055693	N/A	GSAPAPAPEPNLRQMQNQRNELAEKPRLNEAERNEMNVLNRNINQVTQLNRVENKLVNVRPRNNEVREAINEVRFAKSVVPVRENKLQTVLGNAEEVIVKANENTLTERKNEEPVNVPNVAPPAPKTKINARPNLANVRNNGIRVGKTNNTGTRNVATGAVPIVSPVGPARPLGEKTVNGEKEARNFDRTLGEALAKIVK*
GOS2226_10274092	F038654	N/A	MTLIIAILLLLLIIYYDRTRSLYLIQGSPIRVPEAPFAVTNPPDFANVREPIGELTSMMLENNIQVE*