Scaffold GOS2220_1009408

Overview

Basic Information

• Taxon OID: 3300001936
• Scaffold ID: GOS2220_1009408
• Source Dataset Name: Marine microbial communities from Halifax, Nova Scotia, Canada - GS004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1636
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Halifax, Nova Scotia, Canada
• Coordinates
  • Lat. (^o): 44.137222
  • Long. (^o): -63.644444
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F030097	Metagenome	186	N
F044196	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2220_10094082	F009110	AGAAGG	MTESMITSAVRYMESLKDKVPPAGEEVITVKQKRPDTPHLKTLGLDPHKMVKAVDKLKSKGLEVNDACEQVGMTRSQYYKTKKGTTNRK*
GOS2220_10094083	F030097	N/A	MKAIDIAGTQTKVSSCMGFVASGAARDAYRRLLTASTVGESKGEQRKSVFSRTTKEGVKK
GOS2220_10094084	F044196	N/A	MEDITNKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANHLNKQ*
GOS2220_10094085	F006684	N/A	MYKIIISYIIASALALGLLNHAVNKAQGNIETLAEVLVHHADTLEDHRGVLLQMIDDRALPYM*