NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2223_1015916

Scaffold GOS2223_1015916


Overview

Basic Information
Taxon OID3300001935 Open in IMG/M
Scaffold IDGOS2223_1015916 Open in IMG/M
Source Dataset NameMarine microbial communities from Northern Gulf of Maine, Canada - GS007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1608
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNorthern Gulf of Maine, Canada
CoordinatesLat. (o)43.63222Long. (o)-66.84722Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077199Metagenome / Metatranscriptome117Y
F104999Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
GOS2223_10159162F104999N/AMENPENLSPEELKVKKEEMLQFYKESMPYLEAQLDYEKMLSEIDEMRLKRTQIQMAYAQMMAPPEDDGVPMPPEEAPKKKRTLKKETV*
GOS2223_10159163F077199GAGMAIVKRVQKKVIMSTKDIIKFQLITHCYLNRITVSNSDLECLTLLSLTGPIEIAHFCYDAADEQKIFKSQQTVRNCINKCIKFKLVVKGSKNKKLININTKLNIETLGSIFLDYKFLAK*

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