Scaffold EFB_1001902

Overview

Basic Information

• Taxon OID: 3300001919
• Scaffold ID: EFB_1001902
• Source Dataset Name: Elephant fecal microbiome from Asian Elephant baby in Hamburg Zoo, Germany
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54373
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (49.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Source Dataset Sampling Location

• Location Name: Hagenbeck zoo/Hamburg, Germany
• Coordinates
  • Lat. (^o): 53.595256
  • Long. (^o): 9.941572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F098313	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
EFB_100190213	F078006	N/A	MTLAGRKEYHDRTCADMVRGRFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWKDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI*
EFB_100190215	F085718	AGGAGG	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVIISYMDNRDKRQKMVLPNFFSRNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV*
EFB_10019022	F057001	AGG	MPIQVPRARANLMTSKDLNKVQSEVKKASEKTLTGAVKAWCNLFKSGKEINDILKDNDIKVDKAIVPALVALAKEKETVIQLCKEILPRVDSTFCAYKEIEREYYDKQDQDKNVKTTVDKIESIAVLGTNHKRFGYNEPVKFDGGVYYEVFNGSDKRIVKCAIPIKRYTYNLIAKCITYYLTHPKNDK*
EFB_100190261	F083451	N/A	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE*
EFB_10019028	F080673	GGA	MKLQDEALLYLRDNITREEAYYILTKENEMTEVLIAKKKDGSKRIKILDMEYTIERDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRNDRDKIDFMFVYYMARLCV*
EFB_100190297	F098313	AGG	MREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMGKEASFVNLVKDRDDDGRFAILWNFSSDDDITIKNTCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE*