Scaffold JGI24129J20441_1097373

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24129J20441_1097373

Scaffold JGI24129J20441_1097373

Overview

Basic Information
Taxon OID	3300001870 Open in IMG/M
Scaffold ID	JGI24129J20441_1097373 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	541
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.28381	Long. (^o)	-156.5985	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012538	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24129J20441_10973731	F012538	N/A	MTVKPSQAVASLNREFRGVLVSEEAANLGRAVAQIVRGDGWHEAKSSAVLVDAIAGWLGRDCVTALGFYANGTGPVEIVAKVGSFYITGHGVENDDNLTRNACERNRARFSQSRLDEFDPGTLPQRFTWGSPLAQR

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