Scaffold JGI24129J20441_1000175

Overview

Basic Information

• Taxon OID: 3300001870
• Scaffold ID: JGI24129J20441_1000175
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18211
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.28381
  • Long. (^o): -156.5985

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012538	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24129J20441_10001752	F012538	N/A	MTVKPSQAVASLNREFRGVLASEEAANLGRAVGQIVRGDGWHESKSSAVLVDAIAGWLGRDCVTGLGFYANGTGPVEIVAKVGLFYITGHGVENEDDLTRNACERNRARFSQSRLDEFDPGSLPQRFTWGSPLAQRTADRLAVLLAEGIDPEIARVVLGA*