Basic Information | |
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Taxon OID | 3300001867 Open in IMG/M |
Scaffold ID | JGI12627J18819_10020224 Open in IMG/M |
Source Dataset Name | Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2712 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia gtarii | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Davy Crockett National Forest, Groveton, Texas, USA | |||||||
Coordinates | Lat. (o) | 31.11 | Long. (o) | -95.15 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001853 | Metagenome / Metatranscriptome | 626 | Y |
F103651 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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JGI12627J18819_100202241 | F103651 | N/A | MRLDRLTFTALGGIAVFLIGTALLLEDGRALFAPVFGMVGGIAAVASANHERLRERVEALEKRLAQQEWRNGIKAPWNR* |
JGI12627J18819_100202244 | F001853 | GGAG | MYARDPAEAAEVLNLLLKFFGDGERWVKGRLSDRRGNRCLVGALDFVSSHHAIRSEGAERYLADEISAAGDCPDAGGDCARFRASLRRALSGGRYRVSETVLRRDSLSDFNDGCKDFAELRTLILQARAAAMNDADAVPAPGRRLDIEAGDLVMA* |
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