Scaffold RCM31_10133995

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM31_10133995

Scaffold RCM31_10133995

Overview

Basic Information
Taxon OID	3300001851 Open in IMG/M
Scaffold ID	RCM31_10133995 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1181
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Afu?, Para, Brazil
Coordinates	Lat. (^o)	-0.156917	Long. (^o)	-50.62255	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025009	Metagenome	203	Y
F046202	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM31_101339952	F046202	AGGAG	MFDSFGNFFWTFMAMSGLMFWLCVAIFVVMVIRRNRRKFGGRNVY*
RCM31_101339954	F025009	GAG	MNEAIPLDVAWFTSTKGTVGIVKVETQNDGIEYRISAVDGFMEKMDVFQVMAWGARFPDAAGRALFGDSDA*

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