Scaffold RCM31_10101986

Overview

Basic Information

• Taxon OID: 3300001851
• Scaffold ID: RCM31_10101986
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 952
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Afu?, Para, Brazil
• Coordinates
  • Lat. (^o): -0.156917
  • Long. (^o): -50.62255

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012967	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM31_101019862	F012967	GGA	MLTLKRTTQMSNYRISKLIPRTRVQFNPANKKHMLDFAKFVKYNGWKEGCSYFLEDPYTDIPAMIRARISEYTLSRYLEKV*