Scaffold RCM26_1207568

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM26_1207568

Scaffold RCM26_1207568

Overview

Basic Information
Taxon OID	3300001849 Open in IMG/M
Scaffold ID	RCM26_1207568 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	521
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Afu?, Para, Brazil
Coordinates	Lat. (^o)	-0.083883	Long. (^o)	-51.051417	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F029673	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
RCM26_12075681	F029673	N/A	MAACDEQVINGMSNAYDLGAEHERDIICTLIYNMVKEHTLAQNLVDTIRVRE*Q
RCM26_12075682	F004231	AGGAG	MSVKPQDFKHEICVYLDDIGECLVCFDILTPGEELDPDHADDYEIDFAVFDEMGKHITYDIDRKTYNCHNKAMDEMLDITTQWRKEWEESFD

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