NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM41_1001011

Scaffold RCM41_1001011


Overview

Basic Information
Taxon OID3300001847 Open in IMG/M
Scaffold IDRCM41_1001011 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58126
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (24.76%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameSantar?m, Para, Brazil
CoordinatesLat. (o)-2.484383Long. (o)-55.0075Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034153Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
RCM41_100101125F034153N/AMAQQGFQYEINACDVLKPMGFVPKEFKPAGAGHNQPDLMLLHKGQTAGCELKITAASAGSLVLKYDSPIGGMKIGYGGGKNPWSFGKIGPDEDEKQFISSLAEEVGVFKRIAKEWTEEPLKRESKDDKWKATAGKLSPKERYERDRDTFHDIIGEIPATKIEDYYIKKHTYYVNVGTHGFYLMGSQNPLKLEGVPRFGSSASATYRARVQYKGSGNYQFTFEMQFRMRAKSPFNIAPVNGKSVEIIKSQLNLSCFT*
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