Scaffold RCM35_1027332

Overview

Basic Information

• Taxon OID: 3300001844
• Scaffold ID: RCM35_1027332
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 502
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ponta de Pedras, Para, Brazil
• Coordinates
  • Lat. (^o): -1.519367
  • Long. (^o): -48.91795

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F029673	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
RCM35_10273321	F004231	N/A	KPQDFKHEICVYLDDIGECLVCFDILTPGEELDPDHSGIFEYEIDFAVFDEDGKHITYDLERKQYNFCENKAMDEMRDITTQWKKEWEESFD*
RCM35_10273322	F029673	GGAGG	LTKQEMLQHLRMAACDEQVINGMYNAYELGAEHERDIICTLIFNMVKDHHLAQNLVDTIRVRE*