NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM34_1016734

Scaffold RCM34_1016734


Overview

Basic Information
Taxon OID3300001843 Open in IMG/M
Scaffold IDRCM34_1016734 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NamePonta de Pedras, Para, Brazil
CoordinatesLat. (o)-1.519367Long. (o)-48.91795Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001219Metagenome / Metatranscriptome744Y
F010164Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
RCM34_10167341F010164N/AWLQSWKMLYEKEKIDLVEGKYKLVKTGLTETFATTETLIKNFENKSFIALQRYMILVTASKILKKFLYLSEDEQSKLIE
RCM34_10167342F001219N/ATILFIILALVVTFVFLKPISKQLDDRAEFINYTLRKSTILLTFGYEKLSECVGLLTEEVSEMNRQLKLTRNYTNSNFEEEVLSVQKQDSKLLSKLKGDLSIKSAYLFSNVTRELISLTDNFFAKKFQS*

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