Scaffold RCM30_1076072

Overview

Basic Information

• Taxon OID: 3300001842
• Scaffold ID: RCM30_1076072
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM30, ROCA_DNA203_0.2um_MCP-S_C_2b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 564
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Afu?, Para, Brazil
• Coordinates
  • Lat. (^o): -0.156917
  • Long. (^o): -50.62255

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F027179	Metagenome	195	Y
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
RCM30_10760721	F060914	GAG	LKRLIKVRSDISASIYPIQLFQVDDWFTAEEDGVELFRYKTQQLCSFKAKELAQQRRNEKNKKIF
RCM30_10760722	F027179	GAGG	MKLIYMADGLFLYETDNGYIVTDPNNNILKQAHTSQTCSRYILKTLQSRRAAEREAIEKINQSKV*
RCM30_10760723	F002406	N/A	MELNWIKAMSERLRDELSSEYDDETKDLIIRAFAQGLFIKPGILEELKSCSLIESDYFEDVEE*