Scaffold RCM40_1060075

Overview

Basic Information

• Taxon OID: 3300001839
• Scaffold ID: RCM40_1060075
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM40, ROCA_DNA238_2.0um_Ob_C_3b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 652
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ábidos, Para, Brazil
• Coordinates
  • Lat. (^o): -1.919017
  • Long. (^o): -55.525717

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015208	Metagenome / Metatranscriptome	256	Y
F048252	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM40_10600751	F048252	AGG	MMTRKDYIATAEILKYASTKTHPAVFSKMVVDFAVMFA
RCM40_10600752	F015208	N/A	NVANDGNPIHWEKEYSDELNAHEEFAKFVDWGFADEYSTINLHTPSGKCYTKIFYRNGKVVKR*