Scaffold RCM33_1056344

Overview

Basic Information

• Taxon OID: 3300001838
• Scaffold ID: RCM33_1056344
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1145
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ponta de Pedras, Para, Brazil
• Coordinates
  • Lat. (^o): -1.519367
  • Long. (^o): -48.91795

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010081	Metagenome / Metatranscriptome	308	Y
F010397	Metagenome / Metatranscriptome	304	Y
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM33_10563442	F010397	AGGA	MNISEFERHKPVVTMQKINDLINLIDEERVKTEILYKDRVRSLETINELLKDIKSSFKKGE*
RCM33_10563443	F010081	N/A	MKDHIDAVIQKHTEILKTVDTTKSIPMVVKQLDKMVYDMYRELYGLRDVRSNNYYLNSFTAEDKKGHCC*
RCM33_10563445	F042296	AGTAG	MTLFKTIIKWCGVTLYAAFLATVAYAATLPVKVYLITSNRSGDYTIEKIFLIKENAEKYRDMYKDNHNYSIEERSLTE*