Scaffold RCM33_1011684

Overview

Basic Information

• Taxon OID: 3300001838
• Scaffold ID: RCM33_1011684
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1927
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ponta de Pedras, Para, Brazil
• Coordinates
  • Lat. (^o): -1.519367
  • Long. (^o): -48.91795

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM33_10116844	F027490	N/A	MNYGRIISGGAQMRKGLTKNINNKLEGFEEENERRAMVAGAVQKAYDVRTLSDQNVNNIRGGKFTAGTRPSKV*
RCM33_10116845	F001059	AGGA	MYDIEALKADLPTAKELAQFVYDKTGVALDLVGKPKEEQYQVAKNALDGKRVPQDYLTGENPYVDRRELIPEDPIPTLPTRSADLPPEDAMVHFFGATNMPHPLDPQSDRKVQINFKKYENGVITYQVMGPLEKMAQGERINKYGQKQPEKFTWLDPRTPEMVVRNADGTFTSQGRGLYAYCVGEKGAGIWTLIDRENVSINSRNIANPWA*
RCM33_10116846	F006264	N/A	MEDYALIFRQKLAGQVEVCARKALEILQKDLQGTQQLTPQEVYYLSMSAQILLSMRDTYGKK*SQ*