Scaffold ACM55_1032580

Overview

Basic Information

• Taxon OID: 3300001829
• Scaffold ID: ACM55_1032580
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM55, ROCA_DNA132_0.2um_27g
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1451
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 12.4145
  • Long. (^o): -52.2197

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016672	Metagenome / Metatranscriptome	245	N

Sequences

Protein ID	Family	RBS	Sequence
ACM55_10325802	F016672	GGA	LCKVAIHAIVKYMLSLKKLSAIVLPFFVSTTYASDGRTMTDKLTCYNYEKRIVFILDLEKDNEKLNNMNLAVVKRTKDSIELVAPDLLVKFDSHNFIMNVIPTRATEALTMDCTTD*