Scaffold ACM21_1008815

Overview

Basic Information

• Taxon OID: 3300001827
• Scaffold ID: ACM21_1008815
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM21, ROCA_DNA110_2.0um_23k
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5219
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 10.6822
  • Long. (^o): -54.4213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F019643	Metagenome / Metatranscriptome	228	Y
F091970	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM21_100881513	F019643	AGG	MPKYYFNSGTLQLIYSTSKEPYEACRTIIHEINENDELDEFIYCDERGMRDYVSADPQTFVVETEDILRKEGYIK*
ACM21_100881514	F000325	GGAG	MKTANGNDKLGKENCIVVSRPVGDTCPSTCAFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAAKRDKSIRWHERGDWFLNGKLDTDYVDNVVWACESILADGGSLPDMWFYTHIYDSRLVSLDKYMAVYASVHNAQDVLDAKAVGFKLFAWCDSDQKIATKRPRGKVKAQQWRDSLPKLVVIDNEKYVTCPEIRRGRGVVTCTPTKNSVACNLCVKGLGNVLFPSH*
ACM21_10088157	F091970	GAGG	MSKIIVSVAGWCEADPENVRFQLISDMDEQSYITGTEWLELPEWGDKNHAGRDDYILESVAKAFGTALDGEYDHVDIEVEE*