Scaffold ACM39_102002

Overview

Basic Information

• Taxon OID: 3300001822
• Scaffold ID: ACM39_102002
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM39, ROCA_DNA108_2.0um_23a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2186
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 10.6822
  • Long. (^o): -54.4213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051962	Metagenome / Metatranscriptome	143	Y
F072234	Metagenome / Metatranscriptome	121	Y
F103356	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
ACM39_1020021	F072234	N/A	MSEKLYVRQVERYTVWEATEPIEIDVEKLRKCEPPY
ACM39_1020026	F051962	N/A	MTKKQRKEEVIRNLTNTINTESSKPRLDDELVAKLQNRLDSILDGTFVSKVKKKK*
ACM39_1020027	F103356	N/A	MGRTKDLLYDGPDGFNDWKVEKGDMPPYEWFFNPDLRYDMEYEEWMNSEGYVAFVNDEIEITKPKYSDGDLIDALQYARKGIIIEPEEVGKEVYDRLFSEKVFEYLNK*