Scaffold JGI20218J20341_1052329

Overview

Basic Information

• Taxon OID: 3300001808
• Scaffold ID: JGI20218J20341_1052329
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 867
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Twitchell Island, Sacramento and San Joaquin Delta, California, USA
• Coordinates
  • Lat. (^o): 38.1067
  • Long. (^o): -121.6464
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052619	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20218J20341_10523291	F052619	N/A	MKTPIFRPVYKFNRVVEGLYDVICDGITPTLNAFIFTLNSLPGYTDFTNLFDMYRISKIDIDWLPEYTELTDAALVSNAVNVRFNSTIDISDGSAPSTVDEILQYQQVKSTGITKPHNRSWKPCFLMSGLVPCECWLPTSNPAERHYAVKVAIPPTGVAMTFRSRVRLFVECANVN*