Scaffold JGIcombinedJ20147_1003116

Overview

Basic Information

• Taxon OID: 3300001791
• Scaffold ID: JGIcombinedJ20147_1003116
• Source Dataset Name: floor swab of gowning area - replicate A (NASA floor swab of gowning area (6 samples), ASSEMBLY_DATE=20130911)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1622
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location

• Location Name: NASA Jet Propulsion Laboratory, Pasadena, California, USA
• Coordinates
  • Lat. (^o): 34.1991
  • Long. (^o): -118.1715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077781	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ20147_10031161	F077781	N/A	AHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*NHRSSGHTCFRERMLRVSCRLSLDLSSSWVRG*