Scaffold BP130528S2_1731064

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BP130528S2_1731064

Scaffold BP130528S2_1731064

Overview

Basic Information
Taxon OID	3300001789 Open in IMG/M
Scaffold ID	BP130528S2_1731064 Open in IMG/M
Source Dataset Name	BioPara_130528_S2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	643
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Biogas Reactor → Biogas Reactor Microbial Communities From The Max Planck Institute, Germany

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051061	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
BP130528S2_17310641	F051061	N/A	LYLPELDETVYWYPMTAGERQRILNAAGFKWARDAVQMDNAKYKASLIIEKLEDKDGKKIFSNTPEHKDLLINRIDDELLSRIASAIDPPKSEEQQIEEAKND*

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