NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24515J20084_1001715

Scaffold JGI24515J20084_1001715


Overview

Basic Information
Taxon OID3300001743 Open in IMG/M
Scaffold IDJGI24515J20084_1001715 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1930
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F060053Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
JGI24515J20084_10017152F060053GGAGMAFGLIPAGTITRETIISTRRIPVAASESISKGQVCELVSGYLKKSPTTATVDVNHFVALEAIDNSSGSAGDLSAPVAVSGHYVTVVADGVIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGAIITKDGTTPFQETFTDNSDFPPVACADGDIIEIYLGL*
JGI24515J20084_10017153F006550GAGGMQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGLEKIDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAAWDTFVSATTQSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKYTGNTYLRGVASIGPRDYNYEPGTTDLVGIPGIGLVLDNGIKQGDIHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRLITGAITPIDWS*
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