Scaffold JGI24656J20076_1005045

Overview

Basic Information

• Taxon OID: 3300001740
• Scaffold ID: JGI24656J20076_1005045
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1966
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 14.5287
  • Long. (^o): -118.7737

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F029745	Metagenome	187	Y
F084099	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24656J20076_10050451	F084099	GAGG	MKIGDIVTMKQALTPERYGLGLIQKIVEATYVFPHCEPRLVYHILWPDGGISNQYDNEIVLV
JGI24656J20076_10050455	F027156	GGAG	MIPKVGQLLRWYDNPLYCADDTELENDVGIVKEVQLEGVNFFDNDEYAYVVLIDWCKGPHTSYHDEQEYEESIRSGEIVVV*
JGI24656J20076_10050457	F029745	AGGA	MASKAPQVGDVVKSRVTTESVAGFIVGKEGIHVWVRFFDTALAGESWDVFTRRDTLEVLSRANAS*