Scaffold JGI24657J20077_1001490

Overview

Basic Information

• Taxon OID: 3300001738
• Scaffold ID: JGI24657J20077_1001490
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5627
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 11.9811
  • Long. (^o): -108.0335

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24657J20077_10014904	F104992	AGGA	MTTGTRQYISRNGTTTDQGGADTDLTITKSSDKVQLVDPGGSGNNLDLIMVDVSETGVTTAFCEIYVQNEADADEQIQVRDGNNSDNVIGVIDQNFGAWFTWDGTGWXGSSSGLN*