NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24668J20090_10037030

Scaffold JGI24668J20090_10037030


Overview

Basic Information
Taxon OID3300001734 Open in IMG/M
Scaffold IDJGI24668J20090_10037030 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1123
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022774Metagenome213Y
F040380Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
JGI24668J20090_100370301F040380N/AMVAVTKRFESRPIKSRVGAFPDVFGMTNGRFKGTESRSEPRVRFRLAAGKSGYYWCXFVK
JGI24668J20090_100370302F022774GAGMLVTVGTRSAEHSLRSQVGMGSESDCLLGQLNRILEISDSEAGLKAEKSGGVIGEVGECGDADIELLARERRSLDILSVKKEARLSARALAEVEVGRGEEDLRCKSLFIVCQRCRGLSEEEETRLA*

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