Scaffold JGI24655J20075_1002335

Overview

Basic Information

• Taxon OID: 3300001733
• Scaffold ID: JGI24655J20075_1002335
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3655
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 15.9164
  • Long. (^o): -124.5211

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077170	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24655J20075_10023355	F077170	GAGG	VVSQDTAQWMAKKQGKVKRFLGDNIAELNLEVPAGAEKVTLYDQTDGSELVVPSHAAENYRTKPYSVSELINGTLVIRADPTRRHFDWTPPPEIESSVGSAAETVSKISGKKRKRGKRGRR*