Scaffold JGI24652J20063_1012489

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24652J20063_1012489

Scaffold JGI24652J20063_1012489

Overview

Basic Information
Taxon OID	3300001732 Open in IMG/M
Scaffold ID	JGI24652J20063_1012489 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-97
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1021
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	9.2013	Long. (^o)	-163.4956	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010945	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24652J20063_10124891	F010945	AGGAG	VVTRTDCPCGKTGLSSAQMTMHNRSKAHKEWAGDDGEVVEDVDRDFEGILAAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKHISAETERIRLAGWGKGWXIT*

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