Scaffold JGI24514J20073_1005933

Overview

Basic Information

• Taxon OID: 3300001731
• Scaffold ID: JGI24514J20073_1005933
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1540
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052889	Metagenome	142	Y
F072435	Metagenome / Metatranscriptome	121	Y
F079222	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24514J20073_10059331	F052889	GAGG	MKEKTDHIYSTALAYACYKSEPNRVDEHLLKQMFNDLCLLSDEYGFD
JGI24514J20073_10059332	F072435	GAG	MSKQFTIEVKHASQAQLLTIASELKLMSHSWTRFGPRITINNKKLQALELRVPRHKPQASSRKRHNMNTFV*
JGI24514J20073_10059333	F079222	AGGAGG	MKAKIYNEEGRLVAADEATILELLENNGYHVDPDEEDMKKLRIEHGVSDE*