Scaffold JGI24514J20073_1001125

Overview

Basic Information

• Taxon OID: 3300001731
• Scaffold ID: JGI24514J20073_1001125
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5023
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F015325	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24514J20073_10011253	F015325	N/A	MTKKIWLVIEKNTYGENSHSYNISRTANTIEQATTYKVHLDALNDSKNKAYFLASDISTIIDKVVYHHNKAVDEKPLVLTDEVKETSSEMPF*
JGI24514J20073_10011254	F001039	N/A	MIDYNLVLYFGIGLIVFGFVLFLVSEHFERQADIKLFRQEQLTKSFERNKNE*