Scaffold JGI24529J20061_101128

Overview

Basic Information

• Taxon OID: 3300001727
• Scaffold ID: JGI24529J20061_101128
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028194	Metagenome	192	Y
F089007	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24529J20061_1011283	F028194	AGGAGG	MRPEKEDVEKRKVELQKQHDDLLVRVRQGRDALVNMETTLVGLKGAIAQCDWTLELFKEEKKK*
JGI24529J20061_1011284	F089007	AGGA	MDVWDPGEEMTVFSQIKNAIAGLYRGLKGWVVRLYPG