Scaffold JGI24653J20064_1000783

Overview

Basic Information

• Taxon OID: 3300001726
• Scaffold ID: JGI24653J20064_1000783
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4358
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 21.0597
  • Long. (^o): -150.4292

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103073	Metagenome	101	N
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24653J20064_10007831	F103073	GGA	MAHSKNRFVEKQDETFVEVDVPGKDLKVLVPDNRYAYGDTESVAQMAQDVVGKHSNDQGAKVAYEQAREQLETTHFKQLKEDRAIARVYAKKPKFTLVNDFDNFGVLRGIRVFTILNHPSGLREMKQVYYTVDQLMDAVGG*
JGI24653J20064_10007833	F104992	AGGA	MTTGTRQYISRNGTTTDQGGADTDLTITKSSDKVQLVDPGGSGNNLDLIMVDVSETGVTTAFCEIYVQNEADADEQIQVRDGNNSDNVIGVIDQNFGAWFTWDGTGWTGSSSGLN*