Scaffold JGI24654J20067_1009187

Overview

Basic Information

• Taxon OID: 3300001719
• Scaffold ID: JGI24654J20067_1009187
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-109
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 790
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.064
  • Long. (^o): -133.3152

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047914	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24654J20067_10091872	F047914	GAG	MIEKRGNGYRTKIEIEIYSDKDGDYFIEVLNQTHPWVIGSFSTLDQALRYTYFELDNPTGSVEVVDVCEGDISFSFEPSIPVESHPKNVIPLRSKNGKNK*