Scaffold JGI24523J20078_1004222

Overview

Basic Information

• Taxon OID: 3300001718
• Scaffold ID: JGI24523J20078_1004222
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2261
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022311	Metagenome	215	Y
F032077	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24523J20078_10042222	F022311	AGGAG	MARSLIDESYDPIYNQIRGILGEHFENYCFIVMDDRGELFYDYNHLPAGRMLLHEMQLEISDDNIEIEWEFESDPDELDDDAVD*
JGI24523J20078_10042223	F032077	AGTAG	MGIDMSDEDTQIDLKSRMRDALAPMLATEQEKTAKNSLPNNNPEKWLTAASLFLSGASVHEVKKTMTMNHHIAKRINGIVKASDDARVFRQERAIQLASTIDEINSIGEKIAASYLDGSPEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNIQKIEVRHITTPEEAMSLIDSLPEAEVIDIGEDG*