Scaffold WOR8_10034115

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10034115
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7011
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071779	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_100341158	F071779	GAG	MQTTYRIIGFGHANHGFFNQFAFSSSIGYACGIYNAHLHDPEMDGAVIIRVRHEEWEVIQEFNSEHYPISIVYGPLGNFKVEKSPILELV*