Scaffold WOR8_10030772

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10030772
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7394
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
WOR8_100307727	F080002	N/A	MAVTTYTSPAYSQSSTSELKRPCLWDDEHKIENLPAWIYTDNQPPNSIEECEAKLSSLNYTIRDIELQIQIRELELKTGSSRHGNAFDFERWKVGALKAKQTHLYLLNAYTYWLLKNTPKVLDTASKLDKLIALLVEDPADFEQKASALLN*
WOR8_100307728	F085646	N/A	VIKGSPSTIYMDQTLKELKEIKQALTSIDISLQLFVSQKEGRVTSAFVSKKVISQRLNVPAVTLDKLIHQGIVSGGESGLVEGKHYCKTDPDERNSSKFLYDPHAIMQAAWSNFKNV*