Scaffold GBIDBA_10102360

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10102360
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3444
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039175	Metagenome / Metatranscriptome	164	Y
F086307	Metagenome / Metatranscriptome	111	Y
F096226	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1010236010	F086307	N/A	MTNASAIRDLLSMLHEEFKVMLEDMIDRMEDNLSMDDMR*
GBIDBA_1010236012	F096226	AGGA	MSLSRKDLESIICIACGKRYGEHTKGNGTKFNLPSLMECMFRIQGTVVAD
GBIDBA_101023603	F039175	N/A	MVAFRKSFASALTKLGFIEKSYTETTTRPSVAQPYMSTDTGAKLPIFPFPLTMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKYKCNNCSKEFQYAPTADNPDEQPFEANGDNAEAHPRKKKAVAIPKAQALLCDTCGSNDLARPVPEHRKTLENLMNEPVNSNQQTLEDVARQLERDFEIAD