Scaffold GBIDBA_10015259

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10015259
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3920
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019821	Metagenome	227	N
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F081221	Metagenome	114	N
F094527	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1001525912	F094527	N/A	AACARAINADVEASREDILWSLKQLEKQGLARQVGIKAKVFSDDQRGSYKVPVVVDVSEVNNFQRRWVHTIEATPAQDDSAE*
GBIDBA_100152593	F019821	AGGAG	MTISNQTTLQELIELGLFSAADIEKFNNKLTRGADKATRKALVTGTMSAIKALISSDAHEGNRYWSVKPAAHSLGFMSYIETDRGTILKALTKLSEEGYLTKIGLKNVDGKLTELDKSQVNAFQLRYIVTPADEADAAADEAVK*
GBIDBA_100152594	F021526	GGAG	MKYFSIDYRSPPSGMGQIIDTTKPKKIGDQYNFILIDYGSDPHEDVSYVMTKYFYSEQAAQEGWAGPIMTDIFQYLRDQQVTHVHDGELSYEEEGADDDGYFTLDRWIEIMSSYL*
GBIDBA_100152596	F026851	AGG	MTQQQIQQLLKDPENMTPLEQSELGRMKQAYFTAVARETDAYIASKEAYEDAKEFMDHQDPGEREVLMQLLQNVLDGEANMLLIAKELEVHFDISA*
GBIDBA_100152598	F081221	GAG	MDDILQALYNILILFTGFSAIICAALTAVAMTNIAASSMLSYRDDKMLLAWSFPTGLCLTGITLIMLGVL*